Results for 'Harold R. Garner'

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  1. Protein Ontology: A controlled structured network of protein entities.A. Natale Darren, N. Arighi Cecilia, A. Blake Judith, J. Bult Carol, R. Christie Karen, Cowart Julie, D’Eustachio Peter, D. Diehl Alexander, J. Drabkin Harold, Helfer Olivia, Barry Smith & Others - 2013 - Nucleic Acids Research 42 (1):D415-21..
    The Protein Ontology (PRO; http://proconsortium.org) formally defines protein entities and explicitly represents their major forms and interrelations. Protein entities represented in PRO corresponding to single amino acid chains are categorized by level of specificity into family, gene, sequence and modification metaclasses, and there is a separate metaclass for protein complexes. All metaclasses also have organism-specific derivatives. PRO complements established sequence databases such as UniProtKB, and interoperates with other biomedical and biological ontologies such as the Gene Ontology (GO). PRO relates to (...)
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  2. Protein Ontology: Enhancing and scaling up the representation of protein entities.Darren A. Natale, Cecilia N. Arighi, Judith A. Blake, Jonathan Bona, Chuming Chen, Sheng-Chih Chen, Karen R. Christie, Julie Cowart, Peter D'Eustachio, Alexander D. Diehl, Harold J. Drabkin, William D. Duncan, Hongzhan Huang, Jia Ren, Karen Ross & Alan Ruttenberg - 2017 - Nucleic Acids Research 45 (D1):D339-D346.
    The Protein Ontology (PRO; http://purl.obolibrary.org/obo/pr) formally defines and describes taxon-specific and taxon-neutral protein-related entities in three major areas: proteins related by evolution; proteins produced from a given gene; and protein-containing complexes. PRO thus serves as a tool for referencing protein entities at any level of specificity. To enhance this ability, and to facilitate the comparison of such entities described in different resources, we developed a standardized representation of proteoforms using UniProtKB as a sequence reference and PSI-MOD as a post-translational modification (...)
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  3. Review of The End of Morality: taking abolitionism seriously, ed. R. Joyce & R. Garner[REVIEW]Hallvard Lillehammer - forthcoming - International Journal for the Study of Skepticism:1-6.
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  4. Eliminacja etyki a realizm racji.Krzysztof Saja - 2013 - Przeglad Filozoficzny - Nowa Seria 21 (2):87-100.
    Antyrealizm etyczny reprezentowany jest obecnie przez około 30% filozofów analitycznych. Podzielają oni przekonanie, że nie istnieją moralne własności, fakty czy wartości. Przez długi okres rozwijany był on zwłaszcza przez akognitywistów. Jednak od czasu publikacji książki J. Mackiego Ethics. Inventingright and wrong (1977) antyrealistyczny sceptycyzm został zradykalizowany, przybierając także formę teorii globalnego błędu. Przyjęcie powyższego przekonania prowadzi do trzech strategii postępowania: 1. fikcjonalizmu asertorycznego (J. Mackie), 2. fikcjonalizmu nieasertorycznego (R. Joyce) oraz 3. eliminatywizmu (I. Hinckfuss i R. Garner). W artykule, (...)
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  5. A new statistical solution to the generality problem.Samuel Kampa - 2018 - Episteme 15 (2):228-244.
    The Generality Problem is widely recognized to be a serious problem for reliabilist theories of justification. James R. Beebe's Statistical Solution is one of only a handful of attempted solutions that has garnered serious attention in the literature. In their recent response to Beebe, Julien Dutant and Erik J. Olsson successfully refute Beebe's Statistical Solution. This paper presents a New Statistical Solution that countenances Dutant and Olsson's objections, dodges the serious problems that trouble rival solutions, and retains the theoretical virtues (...)
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  6. Some Conspiracy Theories.M. R. X. Dentith - 2023 - Social Epistemology (4):522-534.
    A remarkable feature of the philosophical work on conspiracy theory theory has been that most philosophers agree there is nothing inherently problematic about conspiracy theories (AKA the thesis of particularism). Recent work, however, has challenged this consensus view, arguing that there really is something epistemically wrong with conspiracy theorising (AKA generalism). Are particularism and generalism incompatible? By looking at just how much particularists and generalists might have to give away to make their theoretical viewpoints compatible, I will argue that particularists (...)
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  7. Suspicious conspiracy theories.M. R. X. Dentith - 2022 - Synthese 200 (3):1-14.
    Conspiracy theories and conspiracy theorists have been accused of a great many sins, but are the conspiracy theories conspiracy theorists believe epistemically problematic? Well, according to some recent work, yes, they are. Yet a number of other philosophers like Brian L. Keeley, Charles Pigden, Kurtis Hagen, Lee Basham, and the like have argued ‘No!’ I will argue that there are features of certain conspiracy theories which license suspicion of such theories. I will also argue that these features only license a (...)
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  8. The Problem of Fake News.M. R. X. Dentith - 2016 - Public Reason 8 (1-2):65-79.
    Looking at the recent spate of claims about “fake news” which appear to be a new feature of political discourse, I argue that fake news presents an interesting problem in epistemology. Te phenomena of fake news trades upon tolerating a certain indiference towards truth, which is sometimes expressed insincerely by political actors. Tis indiference and insincerity, I argue, has been allowed to fourish due to the way in which we have set the terms of the “public” epistemology that maintains what (...)
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  9. When Inferring to a Conspiracy might be the Best Explanation.Matthew R. X. Dentith - 2016 - Social Epistemology 30 (5-6):572-591.
    Conspiracy theories are typically thought to be examples of irrational beliefs, and thus unlikely to be warranted. However, recent work in Philosophy has challenged the claim that belief in conspiracy theories is irrational, showing that in a range of cases, belief in conspiracy theories is warranted. However, it is still often said that conspiracy theories are unlikely relative to non-conspiratorial explanations which account for the same phenomena. However, such arguments turn out to rest upon how we define what gets counted (...)
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  10. Algorithmic Decision-Making, Agency Costs, and Institution-Based Trust.Keith Dowding & Brad R. Taylor - 2024 - Philosophy and Technology 37 (2):1-22.
    Algorithm Decision Making (ADM) systems designed to augment or automate human decision-making have the potential to produce better decisions while also freeing up human time and attention for other pursuits. For this potential to be realised, however, algorithmic decisions must be sufficiently aligned with human goals and interests. We take a Principal-Agent (P-A) approach to the questions of ADM alignment and trust. In a broad sense, ADM is beneficial if and only if human principals can trust algorithmic agents to act (...)
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  11. The Problem of Conspiracism.Matthew R. X. Dentith - 2018 - Argumenta 3 (2):327-343.
    Belief in conspiracy theories is typically considered irrational, and as a consequence of this, conspiracy theorists––those who dare believe some conspiracy theory––have been charged with a variety of epistemic or psychological failings. Yet recent philosophical work has challenged the view that belief in conspiracy theories should be considered as typically irrational. By performing an intra-group analysis of those people we call “conspiracy theorists”, we find that the problematic traits commonly ascribed to the general group of conspiracy theorists turn out to (...)
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  12. Expertise and Conspiracy Theories.M. R. X. Dentith - 2018 - Social Epistemology 32 (3):196-208.
    Judging the warrant of conspiracy theories can be difficult, and often we rely upon what the experts tell us when it comes to assessing whether particular conspiracy theories ought to be believed. However, whereas there are recognised experts in the sciences, I argue that only are is no such associated expertise when it comes to the things we call `conspiracy theories,' but that the conspiracy theorist has good reason to be suspicious of the role of expert endorsements when it comes (...)
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  13. Metacognitive control in single- vs. dual-process theory.Aliya R. Dewey - 2023 - Thinking and Reasoning 29 (2):177-212.
    Recent work in cognitive modelling has found that most of the data that has been cited as evidence for the dual-process theory (DPT) of reasoning is best explained by non-linear, “monotonic” one-process models (Stephens et al., 2018, 2019). In this paper, I consider an important caveat of this research: it uses models that are committed to unrealistic assumptions about how effectively task conditions can isolate Type-1 and Type-2 reasoning. To avoid this caveat, I develop a coordinated theoretical, experimental, and modelling (...)
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  14. Secrecy and conspiracy.Matthew R. X. Dentith & Martin Orr - 2017 - Episteme 15 (4):433-450.
    In the literature on conspiracy theories, the least contentious part of the academic discourse would appear to be what we mean by a “conspiracy”: a secretive plot between two or more people toward some end. Yet what, exactly, is the connection between something being a conspiracy and it being secret? Is it possible to conspire without also engaging in secretive behavior? To dissect the role of secrecy in con- spiracies – and thus contribute to the larger debate on the epistemology (...)
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  15. Classifying Psychopathology: Mental Kinds and Natural Kinds.Harold Kincaid & Jacqueline Anne Sullivan - 2014 - In Harold Kincaid & Jacqueline Anne Sullivan (eds.), Classifying Psychopathology: Mental Kinds and Natural Kinds. MIT Press. pp. 1-10.
    In this volume, leading philosophers of psychiatry examine psychiatric classification systems, including the Diagnostic and Statistical Manual of Mental Disorders, asking whether current systems are sufficient for effective diagnosis, treatment, and research. Doing so, they take up the question of whether mental disorders are natural kinds, grounded in something in the outside world. Psychiatric categories based on natural kinds should group phenomena in such a way that they are subject to the same type of causal explanations and respond similarly to (...)
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  16. Logic and the autonomy of ethics.Charles R. Pigden - 1989 - Australasian Journal of Philosophy 67 (2):127 – 151.
    My first paper on the Is/Ought issue. The young Arthur Prior endorsed the Autonomy of Ethics, in the form of Hume’s No-Ought-From-Is (NOFI) but the later Prior developed a seemingly devastating counter-argument. I defend Prior's earlier logical thesis (albeit in a modified form) against his later self. However it is important to distinguish between three versions of the Autonomy of Ethics: Ontological, Semantic and Ontological. Ontological Autonomy is the thesis that moral judgments, to be true, must answer to a realm (...)
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  17. The applied epistemology of conspiracy theories: An overview.M. R. X. Dentith & Brian L. Keeley - 2018 - In David Coady & James Chase (eds.), Routledge Handbook of Applied Epistemology. New York: Routledge, Taylor & Francis Group. pp. 284-294.
    An overview of the current epistemic literature concerning conspiracy theories, as well as indications for future research avenues on the topic.
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  18. On the formalization of the periodic table.Eric R. Scerri - 2005 - Poznan Studies in the Philosophy of the Sciences and the Humanities 84 (1):191-210.
    A critique is given of the attempt by Hettema and Kuipers to formalize the periodic table. In particular I dispute their notions of identifying a naïve periodic table with tables having a constant periodicity of eight elements and their views on the different conceptions of the atom by chemists and physicists. The views of Hettema and Kuipers on the reduction of the periodic system to atomic physics are also considered critically.
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  19. Curricular Aspects of the Fogarty Bioethics International Training Programs.Sam Garner, Amal Matar, J. Millum, B. Sina & H. Silverman - 2014 - Journal of Empirical Research on Human Research Ethics: An International Journal 9 (2):12-23.
    The curriculum design, faculty characteristics, and experience of implementing masters' level international research ethics training programs supported by the Fogarty International Center was investigated. Multiple pedagogical approaches were employed to adapt to the learning needs of the trainees. While no generally agreed set of core competencies exists for advanced research ethics training, more than 75% of the curricula examined included international issues in research ethics, responsible conduct of research, human rights, philosophical foundations of research ethics, and research regulation and ethical (...)
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  20. Why Ramify?Harold T. Hodes - 2015 - Notre Dame Journal of Formal Logic 56 (2):379-415.
    This paper considers two reasons that might support Russell’s choice of a ramified-type theory over a simple-type theory. The first reason is the existence of purported paradoxes that can be formulated in any simple-type language, including an argument that Russell considered in 1903. These arguments depend on certain converse-compositional principles. When we take account of Russell’s doctrine that a propositional function is not a constituent of its values, these principles turn out to be too implausible to make these arguments troubling. (...)
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  21. The evaluative character of imaginative resistance.Dustin R. Stokes - 2006 - British Journal of Aesthetics 46 (4):287-405.
    A fiction may prescribe imagining that a pig can talk or tell the future. A fiction may prescribe imagining that torturing innocent persons is a good thing. We generally comply with imaginative prescriptions like the former, but not always with prescriptions like the latter: we imagine non-evaluative fictions without difficulty but sometimes resist imagining value-rich fictions. Thus arises the puzzle of imaginative resistance. Most analyses of the phenomenon focus on the content of the relevant imaginings. The present analysis focuses instead (...)
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  22. Geach on `good'.Charles R. Pigden - 1990 - Philosophical Quarterly 40 (159):129-154.
    In his celebrated 'Good and Evil' (l956) Professor Geach argues as against the non-naturalists that ‘good’ is attributive and that the predicative 'good', as used by Moore, is senseless.. 'Good' when properly used is attributive. 'There is no such thing as being just good or bad, [that is, no predicative 'good'] there is only being a good or bad so and so'. On the other hand, Geach insists, as against non-cognitivists, that good-judgments are entirely 'descriptive'. By a consideration of what (...)
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  23. The Philosophy of Conspiracy Theory: Bringing the Epistemology of a Freighted Term into the Social Sciences.M. R. X. Dentith - 2018 - In Joseph Uscinski (ed.), Conspiracy Theories and the People Who Believe Them. Oxford University Press. pp. 94-108.
    An analysis of the recent efforts to define what counts as a "conspiracy theory", in which I argue that the philosophical and non-pejorative definition best captures the phenomenon researchers of conspiracy theory wish to interrogate.
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  24. Pressing Christie, Brusse, et al.’s Objection: Why Single Out Selected Effects?Aliya R. Dewey - 2022 - Australasian Philosophical Review 6 (4):412-417.
    Christie, Brusse, et al. argue that selected effects are insufficient to explain the prevalence of traits when selection is heterogeneous. One could object that it’s useful to ground functions in selected effects so long as selected effects are necessary to explain the prevalence of traits. This raises a challenging question: what justifies singling out selected effects from other factors that are necessary to explain the prevalence of traits when selection is heterogeneous? I consider three answers: selected effects are the only (...)
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  25. The Iniquity of the Conspiracy Inquirers.M. R. X. Dentith - 2019 - Social Epistemology Review and Reply Collective 8 (8):1-11.
    A reply to “Why ‘Healthy Conspiracy Theories’ Are (Oxy)morons” by Pascal Wagner-Egger, Gérald Bronner, Sylvain Delouvée, Sebastian Dieguez and Nicolas Gauvrit.
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  26. Autonomism Reconsidered.James Harold - 2011 - British Journal of Aesthetics 51 (2):137-147.
    This paper has three aims: to define autonomism clearly and charitably, to offer a positive argument in its favour, and to defend a larger view about what is at stake in the debate between autonomism and its critics. Autonomism is here understood as the claim that a valuer does not make an error in failing to bring her moral and aesthetic judgements together, unless she herself values doing so. The paper goes on to argue that reason does not require the (...)
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  27. Logicism and the ontological commitments of arithmetic.Harold T. Hodes - 1984 - Journal of Philosophy 81 (3):123-149.
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  28. In Defence of the Letter of Fictionalism.Harold Noonan - 1994 - Analysis 54 (3):133-139.
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  29. What is fake news?M. R. X. Dentith - 2018 - University of Bucharest Review 8 (2):24-34.
    Talk of fake news is rife in contemporary politics, but what is fake news, and how, if anything, does it differ from news which is fake? I argue that in order to make sense of the phenomenon of fake news, it is necessary to first define it and then show what does and does not fall under the rubric of ‘fake news’. I then go on to argue that fake news is not a new problem. Rather, if there is problem (...)
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  30. Nationalism.Renaud-Philippe Garner - 2022 - Oxford Research Encyclopedia of Politics.
    Nationalism is a set of beliefs about the nation: its origins, nature, and value. For nationalists, we are particular social animals. On the one hand, our lives are structured by a profound sense of togetherness and similarity: We share languages and memories. On the other hand, our lives are characterized by deep divisions and differences: We draw borders and contest historical narratives. For nationalism, humanity is neither a single species-wide community nor an aggregation of individuals but divided into distinct and (...)
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  31. Some theorems on the expressive limitations of modal languages.Harold T. Hodes - 1984 - Journal of Philosophical Logic 13 (1):13 - 26.
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  32. Axioms for actuality.Harold T. Hodes - 1984 - Journal of Philosophical Logic 13 (1):27 - 34.
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  33.  98
    Why cosmopolitan war is an ethics of fantasy?Renaud-Philippe Garner - 2020 - European Review of International Studies 7 (2/3):271-292.
    This article argues that Fabre’s cosmopolitan war is implausible because it ignores the psychological realities of war. Building on J.L. Mackie’s notion of an ‘ethics of fantasy’ – a morality reduced to lip-service and incapable of action-guiding – I argue that a view based on a flawed view of either human agency or the environment in which it is exercised is doomed to practical irrelevance. In rejecting patriotism and advancing a highly individualistic view of war, Fabre relies upon a highly (...)
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  34. Arbitrating norms for reasoning tasks.Aliya R. Dewey - 2022 - Synthese 200 (6):1-26.
    The psychology of reasoning uses norms to categorize responses to reasoning tasks as correct or incorrect in order to interpret the responses and compare them across reasoning tasks. This raises the arbitration problem: any number of norms can be used to evaluate the responses to any reasoning task and there doesn’t seem to be a principled way to arbitrate among them. Elqayam and Evans have argued that this problem is insoluble, so they call for the psychology of reasoning to dispense (...)
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  35. In Defence of Particularism: A Reply to Stokes.Matthew R. X. Dentith - 2016 - Social Epistemology Review and Reply Collective 5 (11):27-33.
    A reply to Patrick Stokes' “Between Generalism and Particularism About Conspiracy Theory".
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  36. On Resisting Art.James Harold - 2023 - Journal of Aesthetics and Art Criticism 81 (1):35-45.
    What responsibilities do audiences have in engaging with artworks? Certain audience responses seem quite clear: for example, audiences should not vandalize or destroy artworks; they should not disrupt performances. This paper examines other kinds of resisting responses that audiences sometimes engage in, including petitioning the artist to change their works, altering copies of artworks, and creating new artworks in another artist’s fictional world. I argue for five claims: (1) while these actions can sometimes infringe on the rights of artists, the (...)
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  37. Anatomy’s role in mechanistic explanations of organism behaviour.Aliya R. Dewey - 2024 - Synthese 203 (5):1-32.
    Explanations in behavioural neuroscience are often said to be mechanistic in the sense that they explain an organism’s behaviour by describing the activities and organisation of the organism’s parts that are “constitutively relevant” to organism behaviour. Much has been said about the constitutive relevance of working parts (in debates about the so-called “mutual manipulability criterion”), but relatively little has been said about the constitutive relevance of the organising relations between working parts. Some New Mechanists seem to endorse a simple causal-linking (...)
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  38. The Value of Fidelity in Adaptation.James Harold - 2018 - British Journal of Aesthetics 58 (1):89-100.
    © British Society of Aesthetics 2018. Published by Oxford University Press on behalf of the British Society of Aesthetics. All rights reserved. For Permissions, please email: [email protected] adaptation of literary works into films has been almost completely neglected as a philosophical topic. I discuss two questions about this phenomenon:What do we mean when we say that a film is faithful to its source?Is being faithful to its source a merit in a film adaptation?In response to, I set out two distinct (...)
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  39.  10
    The Imaginal World and the Orientation of Perception: Henry Corbin and the French Phenomenological Context.John V. Garner - 2024 - Journal of Religion 104 (1):1-25.
    This article places Henry Corbin’s concept of creative imagination in conversation with the French phenomenological tradition. Section I explores Corbin’s phenomenological method and his view of the imaginal world, drawn from his interpretations of Suhrawardī and Ibn ‘Arabī. Section II then places this concept in conversation with the early Jean-Paul Sartre’s “annihilative” imagination and Maurice Merleau-Ponty’s critique of it. This section argues that Corbin needs a strong distinction like Sartre’s between imagination and perception but also that he could be seen (...)
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  40. Modal realism, still at your convenience.Harold Noonan & Mark Jago - 2017 - Analysis 77 (2):299-303.
    Divers presents a set of de re modal truths which, he claims, are inconvenient for Lewisean modal realism. We argue that there is no inconvenience for Lewis.
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  41. On the Ancient Idea that Music Shapes Character.James Harold - 2016 - Dao: A Journal of Comparative Philosophy 15 (3):341-354.
    Ancient Chinese and Greek thinkers alike were preoccupied with the moral value of music; they distinguished between good and bad music by looking at the music’s effect on moral character. The idea can be understood in terms of two closely related questions. Does music have the power to affect the ethical character of either listener or performer? If it does, is it better as music for doing so? I argue that an affirmative answers to both questions are more plausible than (...)
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  42. I'm not a conspiracy theorist, but...Matthew R. X. Dentith - 2015 - Fortean Times 1 (324):36-39.
    Typical analyses of belief in conspiracy theories have it that identifying as a conspiracy theorist is irrational. However, given that we know conspiracies occur, and theories about said conspiracies can be warranted, should we really be scared of the locution 'I'm a conspiracy theorist...'?
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  43. A Tale of Two Moralities.Renaud-Philippe Garner - 2016 - Journal of Philosophy 113 (9):446-462.
    In this paper, I seek to close a gap in Michael Walzer’s argument for the moral equality of soldiers. Specifically, I seek to show that Walzer’s argument for the moral equality of soldiers depends upon an implicit analysis of the function of excuses. I provide this analysis of excuses: a triadic relationship between moral norms, a background of normality and excuses. I then use this analysis to show that Jeff McMahan’s argument for the moral inequality of soldiers rest upon an (...)
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  44. Treating Conspiracy Theories Seriously: A Reply to Basham on Dentith.Matthew R. X. Dentith - 2016 - Social Epistemology Review and Reply Collective 5 (9):1-5.
    A response to Lee Basham's 'The Need for Accountable Witnesses: A Reply to Dentith'.
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  45. Defending Aesthetic Internalism: Liking, Loving, and Wholeheartedness.James Harold - forthcoming - Philosophical Quarterly.
    Aesthetic internalism claims a link between judgement and motivation: aesthetic judgements bring with them motivations to act in characteristic ways. Critics object that there is a difference between merely liking something and judging it to be aesthetically good, and that it is our likings, not our aesthetic judgements, that motivate us. This paper develops a version of aesthetic internalism that can respond to this criticism. Wholehearted aesthetic judgements are characterized by stability, attention, and motivation. Making such judgements is an important (...)
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  46. One-step Modal Logics, Intuitionistic and Classical, Part 1.Harold T. Hodes - 2021 - Journal of Philosophical Logic 50 (5):837-872.
    This paper and its sequel “look under the hood” of the usual sorts of proof-theoretic systems for certain well-known intuitionistic and classical propositional modal logics. Section 1 is preliminary. Of most importance: a marked formula will be the result of prefixing a formula in a propositional modal language with a step-marker, for this paper either 0 or 1. Think of 1 as indicating the taking of “one step away from 0.” Deductions will be constructed using marked formulas. Section 2 presents (...)
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  47. Ontological Commitments, Thick and Thin.Harold T. Hodes - 1990 - In George Boolos (ed.), Method, Reason and Language: Essays in Honor of Hilary Putnam. Cambridge University Press. pp. 235-260.
    Discourse carries thin commitment to objects of a certain sort iff it says or implies that there are such objects. It carries a thick commitment to such objects iff an account of what determines truth-values for its sentences say or implies that there are such objects. This paper presents two model-theoretic semantics for mathematical discourse, one reflecting thick commitment to mathematical objects, the other reflecting only a thin commitment to them. According to the latter view, for example, the semantic role (...)
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  48. Immoralism and the Valence Constraint.James Harold - 2008 - British Journal of Aesthetics 48 (1):45-64.
    Immoralists hold that in at least some cases, moral fl aws in artworks can increase their aesthetic value. They deny what I call the valence constraint: the view that any effect that an artwork’s moral value has on its aesthetic merit must have the same valence. The immoralist offers three arguments against the valence constraint. In this paper I argue that these arguments fail, and that this failure reveals something deep and interesting about the relationship between cognitive and moral value. (...)
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  49. On modal logics which enrich first-order S5.Harold T. Hodes - 1984 - Journal of Philosophical Logic 13 (4):423 - 454.
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  50. Where do the natural numbers come from?Harold T. Hodes - 1983 - Synthese 84 (3):347-407.
    This paper presents a model-theoretic semantics for discourse "about" natural numbers, one that captures what I call "the mathematical-object picture", but avoids what I can "the mathematical-object theory".
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